Sequence Analysis Module

This module allows users to compare input sequences (queries) with the amino acid sequences of the selected peptide class, including positive B3PPs, QSPs, or CPPs, using multiple global sequence alignment (MGSA). It also allows users to perform pairwise sequence alignment using the BLAST algorithm. The peptide alignments are displayed as pictogram representations, also known as sequence logos.

To use this module, the user must first paste the sequences in FASTA format into the box below. Then, the user must select the alignment protocol and click "SUBMIT" to start the analysis. To clear the query sequence list, click "RESET".

Paste your FASTA sequences here to begin

Up to 5 sequences per class, or 3 sequences in ALL mode.

Select the class of peptide

Running alignment… this may take a few seconds.

Results
Pairwise Local Alignment
Query Best match Identity Coverage Max Score E-value Matches Mismatches Cutoff (ID≥60%, Cov≥70%)
Alignment Report (TXT)

                

            


            
            

                

                    FASTA Output
                    
                

                

                    

                

            


            
            

                
Pairwise Alignment Visualization

                

                    

                

            


            
            

        


        
        

            

            

                
Results — All Classes